Benchmarking an unstructured grid sediment model in an energetic estuary. Ocean Modeling. 110:32-48.. 2017.
Above and Below: Oregon Coastal Phytoplankton Bloom Dynamics from Sea and Space. Oceanography. Doctor of Philosophy. 2016.
Deciphering ocean carbon in a changing world. Proceedings of the National Academy of Sciences of the United States of America. 113(12):3143-3151.. 2016.
Enumeration of Parasitic Chytrid Zoospores in the Columbia River via Quantitative PCR. Applied and Environmental Microbiology. 82(13):3857-3867.. 2016.
Evaluation of a long-term hindcast simulation for the Columbia River estuary. Ocean Modelling. 99:1-14.. 2016.
Evaluation of Daphnid Grazing on Microscopic Zoosporic Fungi by Using Comparative Threshold Cycle Quantitative PCR. Applied and Environmental Microbiology. 82(13):3868-3874.. 2016.
Fast and Adaptive Indexing of Multi-Dimensional Observational Data. Proceedings of the VLDB Endowment. 9(14):1683-1694.. 2016.
Model-aided Lagrangian interpretation of non-synoptic estuarine observations. Limnology and Oceanography: Methods.. 2016.
Prevalence of chytrid parasitism among diatom populations in the lower Columbia River (2009–2013). Freshwater Biology.. 2016.
Use of continuous, real-time observations & model simulations to achieve autonomous, adaptive sampling of microbial processes with a robotic sampler. Limnol. Oceanogr. Methods. 14(1):50-67.. 2016.
Water age in the Columbia River estuary. Estuarine, Coastal and Shelf Science. 183(Part A):249-259.. 2016.
CoastColour Round Robin data sets: A database to evaluate the performance of algorithms for the retrieval of water quality parameters in coastal waters. Earth System Science Data. 7(2):319-348.. 2015.
Data Like This: Ranked Search of Genomic Data. ExploreDB.. 2015.
Genomic and phenotypic differentiation among Methanosarcina mazei populations from Columbia River sediment. ISME J. 10 March 2015. 2015.
High resolution sampling of methane transport in the Columbia River near-field plume: implications for sources and sinks in a river-dominated estuary. Limnology & Oceanography.. 2015.
Hydrologic control of dissolved organic carbon and nitrogen and dissolved organic matter quality in a semi-arid artificially drained agricultural catchment. Water Resources Research. 51(10):8146–8164.. 2015.
Infrastructure for collaborative science and societal applications in the Columbia River estuary. Frontiers of Earth Science. 9(4):659-682.. 2015.
Metagenomic evidence for reciprocal particle exchange between the mainstream estuary and lateral bay sediments of the lower Columbia River. Frontiers in Microbiology. 6:1074.. 2015.
Microbial Gene Abundance and Expression Patterns across a River to Ocean Salinity Gradient. PLoS ONE. 10(11):e0140578.. 2015.
Monitoring Oregon Coastal Harmful Algae: Observations and implications of a harmful algal bloom-monitoring project. Harmful Algae. 50:32-44.. 2015.
Numerical modeling of circulation in high-energy estuaries: A Columbia River estuary benchmark. Ocean Modelling. 88:54-71.. 2015.
Restriction Cascade Exponential Amplification (RCEA) assay with an attomolar detection limit: a novel, highly specific, isothermal alternative to qPCR. Scientific Reports. 5(7737). 2015.
Are Datasets Like Documents?: Evaluating Similarity-Based Ranked Search Over Scientific Data IEEE Transactions on Knowledge and Data Engineering. (99). 2014.
Assessing the relative importance of local and regional processes on the survival of a threatened salmon population. PLoS ONE. 9(6). 2014.
A calibration equation for oxygen optodes based on physical properties of the sensing foil. Limnology and Oceanography: Methods.. 2014.
Challenges for Dataset Search (keynote). International Conference on Database Systems for Advanced Applications. 8421. 2014.
A cross-scale numerical modeling system for management support of oil spill accidents. Marine Pollution Bulletin. 80(1-2):132-147.. 2014.
Discovery of a Katablepharis sp. in the Columbia River estuary that is abundant during the spring and bears a unique large ribosomal subunit sequence element. MicrobiologyOpen. 3(5):764-776.. 2014.
Focused review: Metagenomic insights into particles and their associated microbiota in a coastal margin ecosystem. Frontiers in Microbiology.. 2014.
Fortnightly Tidal Modulations Affect Net Community Production in a Mesotidal Estuary. Estuaries and Coasts. 37(1):91-110.. 2014.
A new restriction endonuclease-based method for highly-specific detection of DNA targets from methicillin-resistant Staphylococcus aureus. PLOS ONE. 9(5). 2014.
Observations of a Diatom Chytrid Parasite in the Lower Columbia River. Northwest Science. 88(3):234-245.. 2014.
Ranked Similarity Search of Scientific Datasets: An Information Retrieval Approach. Computer Science. Doctor of Philosophy Dissertation. 2014.
Ranked Similarity Search of Scientific Datasets: An Information Retrieval Approach. Computer Science. Ph.D.. 2014.
Associations between Mesodinium rubrum and cryptophyte algae in the Columbia River estuary. Aquatic Microbial Ecology. 68(2). 2013.
Coastal Margin Science and Education in the Era of Collaboratories. Currents. 28(3). 2013.
Contrasting Genomic Properties of Free-living and Particle-attached Microbial Assemblages within a Coastal Ecosystem. Frontiers in Microbiology.. 2013.
Dark Carbon Fixation in the Columbia River’s Estuarine Turbidity Maxima: Molecular Characterization of Red-Type cbbL Genes and Measurement of DIC Uptake Rates in Response to Added Electron Donors. Estuaries and Coasts. 36:1073-1083.. 2013.
Data Near Here: Bringing Relevant Data Closer to Scientists. Computing in Science and Engineering,. 15(3):44-53.. 2013.
Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin. ISME Journal.. 2013.
Disentangling bottom-up and top-down effects on survival during early ocean residence in a population of Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences.. 2013.
Disinfection of Ballast Water with Iron Activated Persulfate. Environmental Science & Technology. 47(20). 2013.
It Takes a Community to Raise a Scientist: A Case for Community-Inspired Research and Science Education in an Alaska Native Community. Currents. 28(3). 2013.
Lessons Learned from a Geoscience Education Program in an Alaska Native Community. Journal of Sustainability Education . 5(2151-7452). 2013.
Nutrient Loading and Transformations in the Columbia River Estuary Determined by High Resolution In Situ Sensors. Estuaries and Coasts. 36(4):708-727.. 2013.
Silicic acid supplied to coastal diatom communities influences cellular silicification and the potential export of carbon. Limnology and Oceanography. :1707-1726.. 2013.
Taming the Metadata Mess. 29th IEEE International Conference on Data Engineering.. 2013.
A Very Smart Kayak .... Currents. 28(3). 2013.
Applications of Fluorescence Spectroscopy for Predicting Percent Wastewater in an Urban Stream. Environmental Science & Technology.. 2012.
Co-variation of crenarchaeol and branched GDGTs in globally-distributed marine and freshwater sedimentary archives. Global and Planetary Change. 92-93. 2012.
Development of real-time assays for impedance-based detection of microbial double-stranded DNA targets. Biosensors and Bioelectronics.. 2012.
Diatom dynamics in a long-lived mesoscale eddy in the northeast subarctic Pacific Ocean. Deep Sea Research Part I: Oceanographic Research Papers.. 2012.
A fully coupled wave-current model on unstructured grids. Journal of Geophysical Research.. 2012.
High resolution microarray assay for rapid taxonomic assessment of Pseudo-nitzschia spp. (Bacillariophyceae) in the field. Harmful Algae .. 2012.
Managing Provenance for Knowledge Discovery and Reuse. School of Computing. Doctor of Philosophy. 2012.
Methane dynamics in the Willamette River, Oregon, U.S.A.. Limnology and Oceanography. 57(5). 2012.
Method for Quantification of Aquatic Primary Production and Net Ecosystem Metabolism using in situ Dissolved Oxygen Sensors. Molecular Biological Technologies for Ocean Sensing.. 2012.
Navigating Oceans of Data. 7338:1-19.. 2012.
Nitrogen fixation in the Gulf of California and the Eastern Tropical North Pacific. Progress in Oceanography.. 2012.
Optical characterization of water masses within the Columbia River Plume. Journal of Geophysical Research. 117(11). 2012.
pCO2 distributions and air-water CO2 fluxes in the Columbia River estuary. Estuarine, Coastal and Shelf Science.. 2012.
Reconstructing hydrodynamic flow parameters of the 1700 tsunami at Cannon Beach, Oregon, USA.. Natural Hazards. 63(1). 2012.
Red waters of Myrionecta rubra are biogeochemical hotspots for the Columbia River estuary with impacts on primary/secondary productions and nutrient cycles. Estuaries and Coasts.. 2012.
Satellite-based detection and monitoring of phytoplankton blooms along the Oregon Coast. Journal of Geophysical Research. 117(12). 2012.
Solvent-Extractable Polycyclic Aromatic Hydrocarbons in Biochar: Influence of Pyrolysis Temperature and Feedstock. Environmental Science & Technology. 46(17):9333-9341.. 2012.
Spatial and temporal variability of bacterioplankton communities across river to ocean environmental gradients. University of Maryland.. 2012.
Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient. ISME Journal. 6:554-563.. 2012.
Ubiquitous dissolved inorganic carbon assimilation by marine heterotrophic bacteria in the Pacific Northwest coastal ocean as determined by DNA-based stable isotope probing. PLoS ONE.. 2012.
When big data leads to lost data. Proceedings of the 5th Ph.D. workshop on Information and knowledge - PIKM '12. :1.. 2012.
- Knowledge Transfer
Seminar Videos →
Thesis Defense Videos →
Presentations by CMOP Members
Authors: C. McNeil; E.A. D’Asaro
Journal Title: Limnology and Oceanography: Methods
Seminar Videos →
Thesis Defense Videos →
Presentations by CMOP Members
ACES: A Community on Ecosystem Services
ASLO 2016 Summer Meeting
Columbia River Estuary Conference 2016