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Publications

Found 37 results
Author [ Type(Asc)] Year
Filters: Author is Baptista, Antonio  [Clear All Filters]
Thesis
Hyde N.  2007.  Towards national estuarine modeling and characterization/classification systems: a pilot study for Coos Bay. Division of Environmental & Biomolecular Systems. Masters Thesis
Frolov S.  2007.  Enabling Technologies for Data Assimilation in a Coastal-Margin Observatory. Division of Environmental & Biomolecular Systems. Ph.D. Dissertation
Burla M.  2009.  The Columbia River estuary and plume: natural variability, anthropogenic change and physical habitat for salmon. Division of Environmental & Biomolecular Systems. Ph.D. Dissertation
Journal Article
Rathmell K, Wilkin M, Welle P, Mattson T, Baptista AM.  2013.  A Very Smart Kayak .... Currents. 28(3)
Fortunato CS, Herfort L, Zuber P, Baptista AM, Crump BC.  2012.  Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient. ISME Journal. 6:554-563.
Ghindilis A L., Smith MW, Schwarzkopf K R., Zhan C, Evans D R., Baptista AM, Simon HM.  2009.  Sensor Array: Impedimetric Label-Free Sensing of DNA Hybridization in Real Time for Rapid, PCR-Based Detection of Microorganisms. Electroanalysis. 21(13):1459-1468.
Zhang Y, Baptista AM.  2008.  SELFE: A semi-implicit Eulerian–Lagrangian finite-element model for cross-scale ocean circulation. Ocean Modelling. 21(3-4):71-96.
Chawla A, Jay DA, Baptista AM, Wilkin M, Seaton C.  2008.  Seasonal Variability and Estuary-Shelf Interactions in Circulation Dynamics of a River-dominated Estuary. Estuaries and Coasts . 31
Smith MW, Herfort L, Tyrol K, Suciu D, Campbell V, Crump BC, Peterson TD, Zuber P, Baptista AM, Simon HM.  2010.  Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin. PLoS ONE . 5(10):e13312.
Burla M, Baptista AM, Zhang Y, Frolov S.  2010.  Seasonal and interannual variability of the Columbia River plume: A perspective enabled by multiyear simulation databases. Journal of Geophysical Research. 115(C00B16)
Baptista AM, Howe B, Freire J, Maier D, Silva CT.  2008.  Scientific Exploration in the Era of Ocean Observatories. Computing in Science & Engineering. 10(3):53-58.
Hickey BM, Kudela RM, Nash JD, Bruland KW, Peterson WT, MacCready P, Lessard EJ, Jay DA, Banas NS, Baptista AM et al..  2010.  River Influences on Shelf Ecosystems: Introduction and synthesis. Journal of Geophysical Research. 115(C00B17)
Frolov S, Baptista AM, Wilkin M.  2008.  Optimizing fixed observational assets in a coastal observatory. Continental Shelf Research. 28(19):2644-2658.
Gilbert M, Needoba JA, Koch C, Barnard A, Baptista AM.  2013.  Nutrient Loading and Transformations in the Columbia River Estuary Determined by High Resolution In Situ Sensors. Estuaries and Coasts. 36(4):708-727.
Herfort L, Peterson TD, McCue LA, Crump BC, Prahl FG, Baptista AM, Campbell V, Warnick R l, Selby M, Roegner GC et al..  2011.  Myrionecta rubra population genetic diversity and its cryptophyte chloroplast specificity in recurrent red tides in the Columbia River estuary. Aquatic Microbial Ecology. 62
Hugo RC, Smythe WF, McAllister SM, Young B, Maring B, Baptista AM.  2013.  Lessons Learned from a Geoscience Education Program in an Alaska Native Community. Journal of Sustainability Education . 5(2151-7452)
Burla M, Baptista AM, Casillas E, Williams JG, Marsh DM.  2010.  The influence of the Columbia River plume on the survival of steelhead (Oncorhynchus mykiss) and Chinook salmon (Oncorhynchus tshawytscha): a numerical exploration. Canadian Journal of Fisheries & Aquatic Sciences. 67(10):1671-1684.
van der Merwe R, Leen TK, Lu Z, Frolov S, Baptista AM.  2007.  Fast neural network surrogates for very high dimensional physics-based models in computational oceanography. Neural Networks. 20(4):462-478.
Frolov S, Baptista AM, Leen TK, Lu Z, van der Merwe R.  2009.  Fast data assimilation using a nonlinear Kalman filter and a model surrogate: An application to the Columbia River estuary. Dynamics of Atmospheres and Oceans. 48(1-3):16-45.
Bruland KW, Lohan MC, Aguilar-Islas AM, Smith GJ, Sohst B, Baptista AM.  2008.  Factors influencing the chemistry of the near-field Columbia River plume: Nitrate, silicic acid, dissolved Fe, and dissolved Mn. Journal of Geophysical Research. 113
Burke BJ, Anderson JJ, Baptista AM.  2014.  Evidence for multiple navigational sensory capabilities by Chinook salmon. Aquatic Biology.
Frolov S, Baptista AM, Zhang Y, Seaton C.  2009.  Estimation of ecologically significant circulation features of the Columbia River estuary and plume using a reduced-dimension Kalman filter. Continental Shelf Research. 29(2):456-466.
Zhang Y, Baptista AM.  2008.  An Efficient and Robust Tsunami Model on Unstructured Grids. Part I: Inundation Benchmarks. Pure and Applied Geophysics. 165(11-12):2229-2248.
Miller J, Teel D, Baptista AM, Morgan C.  2013.  Disentangling bottom-up and top-down effects on survival during early ocean residence in a population of Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences.
Bräuer SL, Kranzler K, Goodson N, Murphy D, Simon HM, Baptista AM, Tebo BM.  2013.  Dark Carbon Fixation in the Columbia River’s Estuarine Turbidity Maxima: Molecular Characterization of Red-Type cbbL Genes and Measurement of DIC Uptake Rates in Response to Added Electron Donors. Estuaries and Coasts. 36:1073-1083.
Bräuer SL, Adams C, Kranzler K, Murphy D, Xu M, Zuber P, Simon HM, Baptista AM, Tebo BM.  2011.  Culturable Rhodobacter and Shewanella species are abundant in estuarine turbidity maxima of the Columbia River. Environmental Microbiology . 13(3)
Azevedo A., Oliveira A, Fortunato AB, Zhang Y, Baptista AM.  2014.  A cross-scale numerical modeling system for management support of oil spill accidents. Marine Pollution Bulletin. 80(1-2):132-147.
Priest GR, Goldfinger C, Wang K, Witter RC, Zhang Y, Baptista AM.  2009.  Confidence levels for tsunami-inundation limits in northern Oregon inferred from a 10,000-year history of great earthquakes at the Cascadia subduction zone. Natural Hazards. 54(1):27-73.
Roegner GC, Needoba JA, Baptista AM.  2011.  Coastal Upwelling Supplies Oxygen-Depleted Water to the Columbia River Estuary. PLoS ONE. 6(4):e18672.
Green V, Bueno Watts N, Wegner K, Thompson M, Johnson AF, Peterson TD, Baptista AM.  2013.  Coastal Margin Science and Education in the Era of Collaboratories. Currents. 28(3)
Roegner GC, Seaton C, Baptista AM.  2011.  Climatic and tidal forcing of hydrography and chlorophyll concentrations in the Columbia River estuary. Estuaries and Coasts. 34(2):281-296.
Anderson CR, Davis RE, Bandolin NS, Baptista AM, Tebo BM.  2011.  Analysis of in situ manganese(II) oxidation in the Columbia River and offshore plume: linking Aurantimonas and the associated microbial community to an active biogeochemical cycle. Environmental Microbiology.