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Spitz YH.  2011.  Ecosystem Modeling of the Oregon Shelf: Everything but the Kitchen Sink. Interdisciplinary Studies on Environmental Chemistry. 5
Smythe WF.  2017.  Morphological Characterization of Bacteriogenic Manganese Oxides From Three Model Manganese (II/III) Oxidizing Bacterial Species. Journal of Postdoctoral Research. 5(3):7-13.
Smythe WF.  2015.  Biomineralization in extreme iron and manganese depositing environments. Division of Environmental & Biomolecular Systems. Doctor of Philosophy
Smythe WF, Hugo RC, McAllister SM.  2017.  Incorporation Of Traditional Knowledge Into Geoscience Education: An Effective Method Of Native American Instruction. Journal of Sustainability Education. 14
Smith MW, Ghindilis A.L., Seoudi I.A., Smith K., Billharz R., Simon HM.  2014.  A new restriction endonuclease-based method for highly-specific detection of DNA targets from methicillin-resistant Staphylococcus aureus. PLOS ONE. 9(5)
Smith MW, Herfort L, Fortunato CS, Crump BC, Simon HM.  2017.  Microbial players and processes involved in phytoplankton bloom utilization in the water column of a fast-flowing, river-dominated estuary. MicrobiologyOpen. (e00467)
Smith MW, Zeigler_Allen L, Allen A, Herfort L, Simon HM.  2013.  Contrasting Genomic Properties of Free-living and Particle-attached Microbial Assemblages within a Coastal Ecosystem. Frontiers in Microbiology.
Smith MW, Maier MA, Suciu D, Peterson TD, Bradstreet T, Nakayama J, Simon HM.  2012.  High resolution microarray assay for rapid taxonomic assessment of Pseudo-nitzschia spp. (Bacillariophyceae) in the field. Harmful Algae .
Smith MW, Davis RE, Youngblut ND, Karna T, Herfort L, Whitaker RJ, Metcalf WW, Tebo BM, Baptista AM, Simon HM.  2015.  Metagenomic evidence for reciprocal particle exchange between the mainstream estuary and lateral bay sediments of the lower Columbia River. Frontiers in Microbiology. 6:1074.
Smith MW, Herfort L, Tyrol K, Suciu D, Campbell V, Crump BC, Peterson TD, Zuber P, Baptista AM, Simon HM.  2010.  Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin. PLoS ONE . 5(10):e13312.
Simon HM, Smith MW, Herfort L.  2014.  Focused review: Metagenomic insights into particles and their associated microbiota in a coastal margin ecosystem. Frontiers in Microbiology.
Silva CT, Freire J, Callahan SP.  2007.  Provenance for Visualizations: Reproducibility and Beyond. Computing in Science & Engineering. 9(5):82-89.
Silva CT, Anderson EW, Santos E, Freire J.  2011.  Using VisTrails and Provenance for Teaching Scientific Visualization. Computer Graphics Forum. 30(1):75-84.
Silva CT, Tohline JE.  2008.  Guest Editorial: Special Issue on Computational Provenance. Computing in Science and Engineering.. 10(3)
Silva CT, Freire J.  2008.  Software Infrastructure for exploratory visualization and data analysis: past, present, and future. Journal of Physics: Conference Series. 125:012100.
Shcherbina AY, McNeil CL, Baptista AM.  2016.  Model-aided Lagrangian interpretation of non-synoptic estuarine observations. Limnology and Oceanography: Methods.
Schreiner JM.  2009.  Uniform and Adaptive (Re) Meshing of Surfaces. Computer Science. Ph.D. Dissertation
Scheidegger C, Vo H, Koop D, Freire J, Silva CT.  2008.  Querying and re-using workflows with VsTrails. ACM SIGMOD international Conference on Management of Data.
Scheidegger C, Koop D, Santos E, Vo H, Callahan SP, Freire J, Silva CT.  2008.  Tackling the Provenance Challenge one layer at a time. Concurrency and Computation: Practice and Experience. 20(5):473-483.
Scheidegger C, Vo H, Koop D, Freire J, Silva CT.  2007.  Querying and Creating Visualizations by Analogy. IEEE Transactions on Visualization and Computer Graphics. 13(6):1560-1567.
Saraceno M, Strub PT, Kosro MP.  2008.  Estimates of sea surface height and near-surface alongshore coastal currents from combinations of altimeters and tide gauges. Journal of Geophysical Research. 113(C11)
Santos E, Lins L, Ahrens J, Freire J, Silva CT.  2009.  VisMashup: Streamlining the Creation of Custom Visualization Applications. IEEE Transactions on Visualization and Computer Graphics. 15(6):1539-1546.
Santos E, Tierny J, Khan A, Grimm B, Lins L, Freire J, Pascucci V, Silva CT, Klasky S, Barreto R et al..  2009.  Enabling Advanced Visualization Tools in a Web-Based Simulation Monitoring System. 2009 5th IEEE International Conference on e-Science (e-Science)2009 Fifth IEEE International Conference on e-Science. :358-365.
Santos E.  2010.  Simplifying the Creation and Deployment of Collaborative Data Analysis and Visualization Tools. School of Computing. Ph.D. Dissertation