Publications

2009

Howe, B; Green-Fishback, H; Maier, D (2009). "Scientific Mashups: Runtime-Configurable Data Product Ensembles." Scientific and Statistical Database Management Conference 2009: 19-36

Kudela, R M; Banas, N S; Barth, J A; Jay, D; Largier, J; Lessard, E J; Peterson, T D; Vander Woude, A J (2009). "New Insights into the Controls and Mechanisms of Plankton Productivity on the US West Coast." Submitted to Oceanography. Vol.21(4): 46-59.

2008

Baptista, A; Howe, B; Freire, J; Maier, D; Silva, C (2008). "Scientific Exploration in the Era of Ocean Observatories." IEEE Computing in Science & Engineering 10(3): 53-58.

Bernardon, F; Ha, L; Callahan, S; Comba, J; Silva, C (2008). "Interactive Transfer Function Specification for Direct Volume Rendering of Disparate Volumes." Computing in Science and Engineering.

Freire, J; Koop, D; Santos, E; Silva, C (2008). "Provenance for Computational Tasks: A Survey." Computing in Science and Engineering 10(3): 11-21.

Frolov, S; Baptista, A; Zhang, Y; Seaton, C (2008). "Estimation of Ecologically Significant Circulation Features of the Columbia River Estuary and Plume Using a Reduced-Dimension Kalman Filter." Ocean Dynamics 29(2) 456-466

Frolov, S; Baptista, A; Wilkin, M. (2008). "Optimizing Placement of Fixed Observational Sensors in a Coastal Observatory." Continental Shelf Research 28(19): 2644-2658

Jannasch, H W; Coletti, L J; Johnson, K S; Fitzwater, S E; Needoba, J A; Plant, J N (2008). "Robust mooring systems for continuously monitoring of complex biogeochemical cycles in estuaries: Design, construction and internal results from Elkhorn Slough, CA." Limnology and Oceanography: Methods 6: 263-276.

Johnson, K S; Needoba, J A (2008). "Mapping the spatial variability of plankton metabolism using nitrate and oxygen sensors on an autonomous underwater vehicle." Limnology and Oceanography: Methods 53 (5 part 2): 2237-2250.

Kirby, R M; Silva, C (2008). "The Need for Verifiable Visualization." IEEE Computer Graphics and Applications 28(5): 78-83.

Koop, D; Scheidegger, C E; Callahan, S P; Vo, H T; Freire, J; Silva, C (2008). "VisComplete: Automating Suggestions for Visualization Pipeline." IEEE Transactions on Visualization and Computer Graphics 14(6): 1691-1698.

Saraceno, M; Strub, P; Kosro, P (2008). "Estimates of sea surface height and near-surface alongshore coastal currents from combinations of altimeters and tide gauges." J. Geophys. Res. 113(C11): 20.

Scheidegger, C; Koop, D; Santos, E; Vo, H; Callahan, S; Freire, J; Silva, C (2008). "Tackling the Provenance Challenge One Layer at a Time." Concurrency And Computation: Practice And Experience(20(5)): 473-483.

Silva, C; Freire, J (2008). "Software Infrastructure for Exploratory Visualization and Data Analysis: Past, Present, and Future." Journal of Physics: Conference Series 125.

Vagin, M Y; Trashin, S A; Karyakin, A A; Mascini, M (2008). Anal. Chem. 80: 7075.

Zhang, Y; Baptista, A (2008). "Benchmarking a new finite-element tsunami model on unstructured grids." Pure and Applied Geophysics 165: 2229-2248.

Zhang, Y; Baptista, A (2008). "SELFE: A semi-implicit Eulerian Lagrangian Finite-element model for cross-scale ocean circulation." Ocean Modelling 21: 3-4, 71-96.

2007

Bernardon, F; Callahan S.; Comba, J; Silva C (2007). "An Adaptive Framework for Visualizing Unstructured Grids with Time-Varying Scalar Fields." Parallel Computing 33(6): 391-405

Daniels, J., L. Ha, et al. (2007). Robust Smooth Feature Extraction from Point Clouds. Shape Modeling International 2007.

Davidson, S., S. Cohen-Boulakia, et al. (2007). "Provenance in Scientific Workflow Systems." IEEE Data Engineering Bulletin(32(4)): 44-50.

Dang, T., Sergey Frolov, Nirupama Bulusu, Wu-chi Feng, and Antonio Baptista, “Near Optimal Sensor Selection in The CORIE Observation Network for Data Assimilation Using Genetic Algorithms”, In Proceedings of the International Conference on Distributed Computing in Sensor Systems (DCOSS 2007), Santa Fe, New Mexico, June 2007.

Dang, T., Nirupama Bulusu, Wu-chi Feng, “RIDA: A Robust Information-Driven Compression Architecture for Irregular Wireless Sensor Networks”, In Proceedings of European Conference on Sensor Networks (EWSN 2007), Delft, Netherlands, Jan. 2007.

Howe, B., D. Maier, L. Bright. Smoothing the ROI Curve for Scientific Data Management Applications Third Biennial Conference on Innovative Data Systems Research (CIDR 2007)

Howe, B., N. Hagerty, E. Van Matre, D. Maier, A. M. Baptista, C. Seaton, P. Turner, "The Ocean Appliance: Complete Platform Provisioning for Low-Cost Data Sharing, IEEE/MTS Oceans 2007, Vancouver, BC, October 2007.

Myers, E., A. Zhang, F. Aikman, Y. Zhang, A. Baptista, P. Turner and C. Seaton. Evaluation and Transition of a Columbia River Nowcast/Forecast Circulation Model to NOAA’s National Ocean Service,” extended abstract, Coastal Zone ‘07, Portland, OR, July 2007

Scheidegger, C. E., H. T. Vo, et al. (2007). "Querying and Creating Visualizations by Analogy." IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE Visualization 2007)(13(6)): 1560-1567.

Silva, C., J. Freire, et al. (2007). "Provenance for Visualization: Reproducibility and Beyond." Computing in Science and Engineering(9(5)): 82-89.

van der Merwe, R., T. K. Leen, et al. (2007). "Fast Neural Network Surrogates for Very High Dimensional Physics-Based Models in Computational Oceanography." Neural Networks(20): 462-478.

Zhang, Y., A. Baptista, K. Wang, C. Goldfinger, R. Witter, G. Priest, C. Peterson, K. Cruikshank. “Hydrodynamic simulations of historic tsunamis from the Cascadia Subduction Zone,” extended abstract, Coastal Zone ’07, Portland, OR, July 2007.

2006

Baptista, A., "CORIE: the first decade of a coastal-margin collaborative observatory," presented at Oceans'06, MTS/ IEEE, Boston, MA, 2006.

Bright, L., D. Maier, B. Howe. Managing the Forecast Factory. Proc. ICDE Workshop on Workflow and Data Flow for Scientific Applications (SciFlow), 2006

Other Dissemination Activities
DIVR White Paper 2006 (.pdf)
This activity is a white paper written by Eda Davis-Butts and addresses STEM Diversity. The paper was prepared to inform the conversation and the work of a statewide initiative in Oregon. The paper reflects the research framework of The SMILE Program.