ELCIRC/SELFE journal papers
  1. Wang, H.V. Loftis, J.D., Liu, Z., Forrest, D. and Zhang, Y.J. (in press) The storm surge and sub-grid inundation modeling in New York City during Hurricane Sandy, Journal of Marine Science and Engineering.
  2. Azevedo, A., Oliveira, A., Fortunato, A.B., Zhang, Y. and Baptista, A.M. (in press) A cross-scale numerical modeling system for management support of oil spill accidents, Marine Pollution Bulletin.
  3. Priest, G.R., Zhang, Y., Witter, R.C., Wang, K., Goldfinger, C. and Stimeley, L. (in press) Tsunami impact to Washington and northern Oregon from segment ruptures on the southern Cascadia subduction zone, Natural Hazards.
  4. Witter, R.C., Y. Zhang, Wang, K., Priest, G.R., Goldfinger, C., Stimely, L., English, J.T. and Ferro, P.A. (in presss) Simulated tsunami inundation for a range of Cascadia megathrust earthquake scenarios at Bandon, Oregon, USA, Geosphere.
  5. Dodet, G., X. Bertin, N. Bruneau, A. B. Fortunato, A. Nahon, and A. Roland (2013), Wave-current interactions in a wave-dominated tidal inlet, J. Geophys. Res. Oceans, 118, 15871605, doi: 10.1002/jgrc.20146.
  6. A.B. Fortunato, M. Rodrigues, J.M. Dias, C. Lopes, A. Oliveira (2013) Generating inundation maps for a coastal lagoon: A case study in the Ria de Aveiro (Portugal), Ocean Engineering, Volume 64, 60-71.
  7. Roland, A., Zhang, Y., Wang, H.V., Meng, Y., Teng, Y., Maderich, V., Brovchenko, I., Dutour-Sikiric, M. and Zanke, U. (2012) A fully coupled wave-current model on unstructured grids, Journal of Geophysical Research-Oceans,117,C00J33,doi:10.1029/2012JC007952.
  8. Wang, D., Li, Y. and Lan, J. (2013) Spatial differentiation of coral species related to wave energy along the Changqi coast, Hainan island, southern China, Continental Shelf Research, 57, pp. 117 - 122.
  9. Jun Kong, Pei Xin, Chenji Shen, Zhiyao Song, Ling Li, 2013. A High-resolution method for the depth-integrated solute transport equation based on an unstructured mesh. Environmental Modeling & Software, 40,109-127.
  10. Fenical, S., Tirindelli, M., Sicular, D., Gragg, J., Huitt, C. (in review) Sand Mining Resource Evaluation and Impact Analysis in Central San Francisco Bay, Marine Geology.
  11. NTHMP (2012) Proceedings and results of the 2011 NTHMP (National Tsunami Hazard Mitigation Program) model benchmarking workshop. Boulder: US Depart. of Commerce/NOAA/NTHMP, NOAA Special Report 436p.
  12. Witter, R.C, Zhang, Y., Wang, K., Goldfinger, C., Priest, G.R., Allan, J.C. (2012) Coseismic slip on the Cascadia megathrust implied by tsunami deposits in an Oregon lake. Journal of Geophysical Research-Solid Earth, 117, B10303, doi:10.1029/2012JB009404.
  13. Pinto, L., Fortunato, A.B., Zhang, Y., Oliveira, A. and Sancho, F.E.P. (2012) Development and validation of a three-dimensional morphodynamic modelling system, Ocean Modelling, Volumes 57-58, 1-14.
  14. Cho, K.H. Wang, H.V., Shen, J., Valle-Levinson, A. and Teng, Y.C. (2012) A modeling study on the response of the Chesapeake Bay to Hurricane Events of Floyd and Isabel. Ocean Modeling, vol. 49-50, pp. 22-46.
  15. Witter, R.C., Jaffe, B., Zhang, Y. and Priest, G.R. (2011) Reconstructing hydrodynamic flow parameters of the 1700 tsunami at Cannon Beach, Oregon, USA., Natural Hazards, DOI 10.1007/s11069-011-9912-7.
  16. Rodrigues, M., Oliveira, A., Queiroga, H., Brotas, V. (in press). Seasonal and diurnal water quality modelling along a salinity gradient (Mira channel, Aveiro lagoon, Portugal), Procedia Environmental Science.
  17. Bertin, X., Bruneau, N., Breilh, J.F., Fortunato, A.B. and Karpytchev, M. (2012) Importance of wave age and resonance in storm surges: the case Xynthia, Bay of Biscay, Ocean Modelling, 42, pp. 16-30.
  18. Brovchenko I., Maderich V. (2011) Study of the role of underwater canyons in sediment transport from the Black Sea east coast. International Journal for Computational Civil and Structural Engineering, 7(2), 39-46.
  19. A. Nahon; X. Bertin, A.B. Fortunato, A. Oliveira (2012). A modeling-based assessment of tidal inlet classification, Marine Geology, vol. 291-294, pp. 1 - 11.
  20. C.L. Lopes, P.A. Silva, J.M. Dias, A. Rocha, A.T. Picado, S. Plecha, A.B. Fortunato, 2011. Local sea level rise scenarios for the end of the 21st century and potential physical impacts in the lower Ria de Aveiro (Portugal), Continental Shelf Research, 31/14: 1515-1526
  21. Picado, P. A. Silva, A. B. Fortunato and J. M. Dias. 2011. Particle tracking-modeling of morphologic changes in the Ria de Aveiro, J. Coastal Res., SI64, 1560-1564.
  22. Zhang, Y., Witter, R.W. and Priest, G.P. (2011) Tsunami-Tide Interaction in 1964 Prince William Sound Tsunami, Ocean Modelling, 40, 246-259.
  23. A.B. Fortunato, N. Bruneau, A. Azevedo, M.A.V.C. Araúnd A. Oliveira. 2011. Automatic improvement of unstructured grids for coastal simulations J. Coastal Res., SI64, 1028-1032.
  24. A. Nahon, A. B. Fortunato, X. Bertin, A. R. Pires, A. Oliveira, M.C. Freitas, C. Andrade. 2011. Numerical modelling of opening and closure of an artificial inlet (Santo Andréagoon, Portugal). Revista GestãCosteira Integrada, 11/3: 341-353
  25. J. Rosa, D. Gonçves, P.A. Silva, L.M. Pinheiro, L. Rebê, A.B. Fortunato, X Bertin. 2011. Sand Extraction Evolution Area offshore Vale do Lobo (Algarve, Portugal) - comparison between numerical results and bathymetric data, Revista GestãCosteira Integrada, 11/3: 369-377.
  26. N. Bruneau, A.B Fortunato, G. Dodet, P. Freire, A. Oliveira, X. Bertin, 2011. Future evolution of a tidal inlet due to changes in wave climate, sea level and lagoon morphology (Óidos Lagoon, Portugal), Continental Shelf Research, 31/18: 1915-1930
  27. N. Bruneau, G. Dodet, X. Bertin and A. B. Fortunato. 2011. Development of a three-dimensional coupled wave-current model for coastal environments, J. Coastal Res., SI64, 986-990.
  28. J. Rosa, P. A. Silva, X. Bertin and A. B. Fortunato.2011. Waves, wind and tidal forcing on a sandpit morphodynamics, J. Coastal Res., SI64, 1070-1074.
  29. M. Rodrigues, A. Oliveira, M. Guerreiro, A.B. Fortunato, J. Menaia, L.M. David & A. Cravo. 2011. Modeling fecal contamination in the Aljezur coastal stream (Portugal), Ocean Dynamics, 61:841.856.
  30. Oliveira, M. Rodrigues, A.B. Fortunato and M. Guerreiro. 2011. Impact of seasonal bathymetric changes and inlet morphology on the 3D water renewal and residence times of a small coastal stream, J. Coastal Res., SI64, 1555-1559.
  31. Picado, A., Dias, J.M. and Fortunato, A.B. 2010. Tidal changes in estuarine systems induced by local geomorphologic modifications, Continental Shelf Res., 30/17: 1854-1864.
  32. Plecha, S., P.A. Silva, N. Vaz, X. Bertin, A. Oliveira, A.B. Fortunato and J.M. Dias. 2010. Sensitivity analysis of a morphodynamic modelling system applied to a coastal lagoon inlet, Ocean Dynamics, 60/2: 275-284.
  33. Jun Kong, Pei Xin, Zhi-yao Song, Ling Li (2010) A new model for coupling surface and subsurface water flows: With an application to a lagoon. Journal of Hydrology,390:116-120.
  34. Priest, G.R., Goldfinger, C., Wang, K., Witter, R.C., Zhang, Y., Baptista, A.M. (2010) Confidence levels for tsunami-inundation limits in northern Oregon inferred from a 10,000-year history of great earthquakes at the Cascadia subduction zone. Natural Hazards, 54(1), 27-73.
  35. Burla, M., Baptista, A.M. Zhang, Y.L., and Frolov, S. (2010) Seasonal and inter-annual variability of the Columbia River plume: a perspective enabled by multi-year simulation databases. Journal of Geophysical Research: special issue on NSF RISE project, 115, C00B16.
  36. Frolov, S., Baptista, A.M., Zhang, Y.L., and Seaton, C. (2009) Estimation of Ecologically Significant Circulation Features of the Columbia River Estuary and Plume Using a Reduced-Dimension Kalman Filter. Continental Shelf Research, 29(2), 456-466.
  37. Gong, W., Shen, J., Cho, K.H. and Wang, H.V. (2009) A numerical model study of barotropic subtidal water exchange between estuary and subestuaries (tributaries) in the Chesapeake Bay during northeaster events, Ocean Modelling, 26(3-4), 170-189.
  38. Bertin, X., A. Oliveira and A.B. Fortunato (2009). Simulating morphodynamics with unstructured grids: description and validation of an operational model for coastal applications, Ocean Modelling, 28(1-3): 75-87.
  39. Frolov, S., A.M. Baptista, M. Wilkin, (2008). Optimizing Placement of Fixed Observational Sensors in a Coastal Observatory, Continental Shelf Research, 28(19) 2644-2659.
  40. Fortunato, A.B., X. Bertin and A. Oliveira (2009) Space and time variability of uncertainty in morphodynamic simulations, Coastal Engineering, 56(8): 886-894 .
  41. Azevedo, A., A. Oliveira, A.B. Fortunato and X. Bertin (2009) Application of an Eulerian-Lagrangian oil spill modeling system to the Prestige accident: trajectory analysis, J. Coastal Research, SI56: 777-781.
  42. Bertin, X., A.B. Fortunato and A. Oliveira (2009) A modeling-based analysis of processes driving wave-dominated inlets, Continental Shelf Research, 29(5-6): 819-834.
  43. Bertin, X., A.B. Fortunato and A. Oliveira (2009) Morphodynamic modeling of the Ancão Inlet, South Portugal, J. Coastal Research, SI56: 10-14.
  44. Dias, J.M., M.C. Sousa, X. Bertin, A.B. Fortunato and A. Oliveira (2009) Numerical modeling of the impact of the Ancão Inlet relocation (Ria Formosa, Portugal), Environmental Modeling and Software, 24: 711-725.
  45. Lopes, V., P.A. Silva, X. Bertin, A.B. Fortunato and A. Oliveira (2009) Impact of a dredged sandpit on tidal and wave hydrodynamics, J. Coastal Research, SI56: 529-533.
  46. Picado, A., J.M. Dias, A.B. Fortunato (2009) Effect of flooding the salt pans in the Ria de Aveiro, J. of Coastal Research, SI56, 1395-1399.
  47. Rodrigues, M., A. Oliveira, M. Costa, A.B. Fortunato and Y.J. Zhang (2009) Sensitivity analysis of an ecological model applied to the Ria de Aveiro, J. Coastal Research, SI56, 448-452.
  48. Rodrigues, M., A. Oliveira, H. Queiroga, A.B. Fortunato and Y.J. Zhang (2009) Three-Dimensional Modeling of the Lower Trophic Levels in the Ria de Aveiro (Portugal), Ecological Modelling, 220, 1274-1290.
  49. Zhang, Y.L., and Baptista, A.M. (2008) An Efficient and Robust Tsunami Model on Unstructured Grids. Part I: Inundation Benchmarks. Pure and Applied Geophysics: Topical issue on Tsunamis, vol. 165, pp. 1-20. pdf .
  50. Zhang, Y.-L. and Baptista, A.M. (2008) "SELFE: A semi-implicit Eulerian-Lagrangian finite-element model for cross-scale ocean circulation", Ocean Modelling, 21(3-4), 71-96. link
  51. C.F.Wang, H.V. Wang, and A.Y. Kuo (2008) Mass Conservative Transport Scheme for the Application of the ELCIRC Model to Water Quality Computation. Journal of Hydraulic Engineering, ASCE, 1166.
  52. Foreman, M.G.G., Stucchi, D., Zhang, Y.-L. and Baptista, A.M. 2005 "Estuarine and tidal currents in the Broughton Archipelago", Atmospherie-Ocean, 44(1): 47-63.
  53. Baptista, A.M., Zhang, Y.-L., Chawla, A., Zulauf, M.A., Seaton, C., Myers, E.P., Kindle, J., Wilkin, M., Burla, M. and Turner, P.J. 2005 "A cross-scale model for 3D baroclinic circulation in estuary-plume-shelf systems: II. Application to the Columbia River". Continental Shelf Research, 25, 935-972. pdf
  54. Zhang, Y.-L., Baptista, A.M. and Myers, E.P. (2004) "A cross-scale model for 3D baroclinic circulation in estuary-plume-shelf systems: I. Formulation and skill assessment". Cont. Shelf Res., 24: 2187-2214. pdf files: pdf
  55. Oliveira, A., A.B. Fortunato and L. Pinto, 2006. Modeling the Hydrodynamics and the Fate of Passive and Active Tracers in the Guadiana Estuary, Estuarine, Coastal and Shelf Science, 70, 76-84.
  56. Oliveira, A., A.B. Fortunato and J. Rego, (2006). Effect of Morphological Changes on the Hydrodynamics and Flushing Properties of the Óbidos lagoon, Continental Shelf Research, 26, 917-942.
  57. Pinto, L.L., A.B. Fortunato, A. Oliveira and A.M. Baptista, 2004. Haline stratification in the Guadiana estuary. II ? Numerical modeling, Recursos Hídricos, 25/2: 99-110. (in Portuguese)
  58. A.B. Fortunato and A. Oliveira. 2007. Case study: Promoting the stability of the Obidos Lagoon Inlet. J. Hydraulic Eng., 133(7): 816-824. pdf
  59. Fortunato, A.B. and A. Oliveira (2007) Improving the stability of a morphodynamic modeling system, Journal of Coastal Research, SI50: 486-490.
  60. Oliveira, A., A.B. Fortunato, M. Rodrigues and A. Azevedo (2007) Integration of physical and water quality models, Houille Blanche, 4: 40-46.